CloneSeeker: Seeking and Finding Clones in Copy Number and Sequencing Data

Defines the classes and functions used to simulate and to analyze data sets describing copy number variants and, optionally, sequencing mutations in order to detect clonal subsets. See Zucker et al. (2019) <doi:10.1093/bioinformatics/btz057>.

Version: 1.0.7
Depends: R (≥ 3.0)
Imports: methods, graphics, combinat, gtools, quantmod
Published: 2019-05-06
Author: Kevin R. Coombes, Mark Zucker
Maintainer: Kevin R. Coombes <krc at silicovore.com>
License: Apache License (== 2.0)
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
CRAN checks: CloneSeeker results

Downloads:

Reference manual: CloneSeeker.pdf
Vignettes: CloneSeeker
Package source: CloneSeeker_1.0.7.tar.gz
Windows binaries: r-devel: CloneSeeker_1.0.7.zip, r-release: CloneSeeker_1.0.7.zip, r-oldrel: CloneSeeker_1.0.7.zip
OS X binaries: r-release: CloneSeeker_1.0.7.tgz, r-oldrel: CloneSeeker_1.0.7.tgz
Old sources: CloneSeeker archive

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