ADaCGH: Analysis of data from aCGH experiments
Analysis and plotting of array CGH data. Allows usage of
Circular Binary Segementation, wavelet-based smoothing (both as
in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE
method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's
modification of Smith & Waterman's algorith. Most computations
are parallelized. Figures are imagemaps with links to IDClight
(http://idclight.bioinfo.cnio.es).
| Version: |
1.3-13 |
| Depends: |
R (≥ 2.2.1), cgh, tilingArray, aCGH, cghMCR, papply, GDD, waveslim, cluster, snapCGH, Hmisc |
| Suggests: |
Rmpi, GLAD, DNAcopy, rsprng |
| Published: |
2009-05-26 |
| Author: |
Ramon Diaz-Uriarte, Oscar M. Rueda. Wavelet-based aCGH smoothing code from Li
Hsu and Douglas Grove.
Imagemap code from Barry Rowlingson. HaarSeg code from Erez
Ben-Yaacov; downloaded from
<http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm> |
| Maintainer: |
Ramon Diaz-Uriarte <rdiaz02 at gmail.com> |
| License: |
GPL (≥ 3) |
| URL: |
http://adacgh2.bioinfo.cnio.es, http://launchpad.net/adacgh |
| Citation: |
ADaCGH citation info |
| In views: |
HighPerformanceComputing |
| CRAN checks: |
ADaCGH results |
Downloads: