CRAN Package Check Results for Package phyloland

Last updated on 2019-09-21 08:50:17 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 5.72 42.71 48.43 NOTE
r-devel-linux-x86_64-debian-gcc 1.3 5.05 32.65 37.70 NOTE
r-devel-linux-x86_64-fedora-clang 1.3 58.43 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3 60.36 NOTE
r-devel-windows-ix86+x86_64 1.3 18.00 67.00 85.00 NOTE
r-patched-linux-x86_64 1.3 5.78 41.85 47.63 NOTE
r-patched-solaris-x86 1.3 84.20 NOTE
r-release-linux-x86_64 1.3 5.48 41.85 47.33 NOTE
r-release-windows-ix86+x86_64 1.3 11.00 67.00 78.00 NOTE
r-release-osx-x86_64 1.3 NOTE
r-oldrel-windows-ix86+x86_64 1.3 10.00 68.00 78.00 NOTE
r-oldrel-osx-x86_64 1.3 NOTE

Check Details

Version: 1.3
Check: R code for possible problems
Result: NOTE
    PLD_interface: no visible global function definition for 'read.table'
    PLD_interface: no visible global function definition for 'write.table'
    PLD_loc_mrca: no visible global function definition for 'barplot'
    PLD_plot_stat_mig: no visible global function definition for 'density'
    PLD_plot_stat_mig: no visible global function definition for 'rainbow'
    PLD_plot_stat_mig: no visible global function definition for 'plot'
    PLD_plot_stat_mig: no visible global function definition for 'lines'
    PLD_plot_stat_mig: no visible global function definition for 'legend'
    PLD_plot_trees: no visible global function definition for 'par'
    break_node_height_tie: no visible global function definition for
     'qnorm'
    break_node_height_tie: no visible global function definition for
     'runif'
    break_node_height_tie: no visible global function definition for
     'pnorm'
    effSaSize: no visible global function definition for 'acf'
    effSaSize: no visible global function definition for 'sd'
    mcmc_phyloland: no visible global function definition for 'write.table'
    mcmc_phyloland: no visible global function definition for 'par'
    mcmc_phyloland: no visible global function definition for 'barplot'
    mcmc_phyloland: no visible global function definition for 'hist'
    mcmc_phyloland: no visible global function definition for 'title'
    mcmc_phyloland: no visible global function definition for 'runif'
    read_loc: no visible global function definition for 'read.table'
    read_space: no visible global function definition for 'read.table'
    sigma_upperlim: no visible global function definition for 'pnorm'
    space_dist: no visible global function definition for 'dist'
    stat_phyloland: no visible global function definition for 'density'
    stat_phyloland: no visible global function definition for 'quantile'
    Undefined global functions or variables:
     acf barplot density dist hist legend lines par plot pnorm qnorm
     quantile rainbow read.table runif sd title write.table
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "barplot", "hist", "legend", "lines", "par",
     "plot", "title")
     importFrom("stats", "acf", "density", "dist", "pnorm", "qnorm",
     "quantile", "runif", "sd")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.3
Check: compiled code
Result: NOTE
    File ‘phyloland/libs/phyloland.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc