CRAN Package Check Results for Package mppR

Last updated on 2019-09-20 18:48:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.0 9.11 188.74 197.85 OK
r-devel-linux-x86_64-debian-gcc 1.2.0 7.26 142.18 149.44 OK
r-devel-linux-x86_64-fedora-clang 1.2.0 222.22 OK
r-devel-linux-x86_64-fedora-gcc 1.2.0 254.67 OK
r-devel-windows-ix86+x86_64 1.2.0 28.00 198.00 226.00 OK
r-patched-linux-x86_64 1.2.0 8.16 185.83 193.99 OK
r-patched-solaris-x86 1.2.0 317.10 OK
r-release-linux-x86_64 1.2.0 8.52 186.60 195.12 OK
r-release-windows-ix86+x86_64 1.2.0 17.00 263.00 280.00 OK
r-release-osx-x86_64 1.2.0 ERROR
r-oldrel-windows-ix86+x86_64 1.2.0 14.00 179.00 193.00 OK
r-oldrel-osx-x86_64 1.2.0 OK

Check Details

Version: 1.2.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘synbreed’
Flavor: r-release-osx-x86_64

Version: 1.2.0
Check: examples
Result: ERROR
    Running examples in ‘mppR-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: IBS.mppData
    > ### Title: IBS coding for 'mppData' objects
    > ### Aliases: IBS.mppData
    >
    > ### ** Examples
    >
    >
    > data(mppData_init)
    >
    > mppData <- QC.mppData(mppData_init)
    
    Check genotyping error : 0 markers removed
    Remove monomorphic/missing marker in parents : 2 markers removed
    Remove marker with missing rate < 0.1 : 2 markers removed
    Remove genotype with missing rate < 0.25 : 2 genotypes removed
    Remove crosses with less than 15 observations : 0 genotypes removed
    Remove markers at the same position : 0 markers removed
    Remove markers with MAF < 0.05 : 0 markers removed
    
     End : 98 marker(s) remain after the check
     498 genotypes(s) remain after the check
    >
    > mppData <- IBS.mppData(mppData = mppData, impute = TRUE,
    + impute.type = "random")
    Error in loadNamespace(name) : there is no package called ‘synbreed’
    Calls: IBS.mppData ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.2.0
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘mppR_vignette.rnw’
     ...
    
     End : 98 marker(s) remain after the check
     498 genotypes(s) remain after the check
    
    > mppData <- IBS.mppData(mppData = mppData, impute = TRUE,
    + impute.type = "random")
    
     When sourcing ‘mppR_vignette.R’:
    Error: there is no package called ‘synbreed’
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.2.0
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘mppR_vignette.rnw’ using Sweave
    
    Error: processing vignette 'mppR_vignette.rnw' failed with diagnostics:
     chunk 10 (label = IBS.mppData)
    Error in loadNamespace(name) : there is no package called ‘synbreed’
    
    --- failed re-building ‘mppR_vignette.rnw’
    
    SUMMARY: processing the following file failed:
     ‘mppR_vignette.rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64