CRAN Package Check Results for Maintainer ‘Michael P. Fay <mfay at niaid.nih.gov>’

Last updated on 2019-09-20 01:48:16 CEST.

Package ERROR NOTE OK
asht 12
binseqtest 12
bpcp 12
choplump 12
exact2x2 12
exactci 12
hbim 12
interval 1 11
MChtest 12
nivm 12
perm 12
rateratio.test 12
saws 12
ssanv 12

Package asht

Current CRAN status: OK: 12

Package binseqtest

Current CRAN status: OK: 12

Package bpcp

Current CRAN status: OK: 12

Package choplump

Current CRAN status: NOTE: 12

Version: 1.0-0.4
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0-0.4
Check: R code for possible problems
Result: NOTE
    Qh.times.dhyper: no visible global function definition for 'var'
    Qh.times.dhyper: no visible global function definition for 'pnorm'
    Qh.times.dhyper: no visible global function definition for 'dhyper'
    TDiM: no visible global function definition for 'sd'
    choplump.default: no visible global function definition for
     'flush.console'
    choplump.formula: no visible global function definition for 'terms'
    cm.compact: no visible global function definition for 'dhyper'
    Undefined global functions or variables:
     dhyper flush.console pnorm sd terms var
    Consider adding
     importFrom("stats", "dhyper", "pnorm", "sd", "terms", "var")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package exact2x2

Current CRAN status: OK: 12

Package exactci

Current CRAN status: OK: 12

Package hbim

Current CRAN status: NOTE: 12

Version: 1.0.3
Check: R code for possible problems
Result: NOTE
    calc.foldrange: no visible global function definition for 'qt'
    calc.foldrange: no visible global function definition for 'qnorm'
    equiv.ab: no visible global function definition for 'approx'
    equiv.increase: no visible global function definition for 'approx'
    hbpp.integrate1: no visible global function definition for 'pnorm'
    hbpp.integrate2 : hb.y: no visible global function definition for
     'integrate'
    hbpp.integrate2: no visible global function definition for 'integrate'
    hbpp.integrate3 : hb.z : hb.yZ: no visible global function definition
     for 'integrate'
    hbpp.integrate3 : hb.z: no visible global function definition for
     'integrate'
    hbpp.integrate3: no visible global function definition for 'integrate'
    hbpp.simulate: no visible global function definition for 'rnorm'
    hbrr.integrate1 : hb.x: no visible global function definition for
     'dnorm'
    hbrr.integrate1: no visible global function definition for 'integrate'
    hbrr.integrate2 : hb.y: no visible global function definition for
     'integrate'
    hbrr.integrate2: no visible global function definition for 'integrate'
    hbrr.integrate2.rhoeq1 : hb.x: no visible global function definition
     for 'dnorm'
    hbrr.integrate2.rhoeq1: no visible global function definition for
     'integrate'
    hbrr.integrate3 : hb.z : hb.yZ: no visible global function definition
     for 'integrate'
    hbrr.integrate3 : hb.z: no visible global function definition for
     'integrate'
    hbrr.integrate3: no visible global function definition for 'integrate'
    hbrr.integrate3.rhoeq1 : hb.x: no visible global function definition
     for 'dnorm'
    hbrr.integrate3.rhoeq1: no visible global function definition for
     'integrate'
    hbrr.simulate: no visible global function definition for 'rnorm'
    plotlogm.resp: no visible global function definition for 'plot'
    plotlogm.resp: no visible global function definition for 'axis'
    plotlogm.resp: no visible global function definition for 'box'
    plotlogm.resp: no visible global function definition for 'lines'
    plotresp.equiv: no visible global function definition for 'plot'
    plotresp.equiv : doline: no visible global function definition for
     'lines'
    plotresp.mix: no visible global function definition for 'plot'
    plotresp.mix : doline: no visible global function definition for
     'lines'
    plotresp.mix: no visible global function definition for 'lines'
    Undefined global functions or variables:
     approx axis box dnorm integrate lines plot pnorm qnorm qt rnorm
    Consider adding
     importFrom("graphics", "axis", "box", "lines", "plot")
     importFrom("stats", "approx", "dnorm", "integrate", "pnorm", "qnorm",
     "qt", "rnorm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package interval

Current CRAN status: ERROR: 1, NOTE: 11

Version: 1.1-0.1
Check: R code for possible problems
Result: NOTE
    icScoreTest: no visible global function definition for 'pnorm'
    icScoreTest: no visible global function definition for 'pchisq'
    icfit.formula: no visible global function definition for 'terms'
    icfit.formula: no visible global function definition for
     'model.extract'
    icfitBootCI: no visible global function definition for 'binom.test'
    ictest.formula: no visible global function definition for
     'model.extract'
    plot.icfit: no visible global function definition for 'gray'
    plot.icfit: no visible global function definition for 'plot'
    plot.icfit: no visible global function definition for 'axis'
    plot.icfit : polygon.icfit: no visible global function definition for
     'polygon'
    scoresFromFit: no visible global function definition for 'dnorm'
    scoresFromFit: no visible global function definition for 'qnorm'
    wsrHLYpclt: no visible global function definition for 'model.matrix'
    wsrHLYpclt: no visible global function definition for 'pchisq'
    wsrHLYpclt: no visible global function definition for 'pnorm'
    Undefined global functions or variables:
     axis binom.test dnorm gray model.extract model.matrix pchisq plot
     pnorm polygon qnorm terms
    Consider adding
     importFrom("grDevices", "gray")
     importFrom("graphics", "axis", "plot", "polygon")
     importFrom("stats", "binom.test", "dnorm", "model.extract",
     "model.matrix", "pchisq", "pnorm", "qnorm", "terms")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-0.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘Icens’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Package MChtest

Current CRAN status: OK: 12

Package nivm

Current CRAN status: OK: 12

Package perm

Current CRAN status: NOTE: 12

Version: 1.0-0.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0-0.0
Check: R code for possible problems
Result: NOTE
    ksample.pclt: no visible global function definition for 'pchisq'
    pCI: no visible global function definition for 'qbeta'
    permKS.formula: no visible global function definition for 'terms'
    permTREND.default: no visible global function definition for 'cor'
    permTREND.formula: no visible global function definition for 'terms'
    permTS.formula: no visible global function definition for 'terms'
    trend.pclt: no visible global function definition for 'pnorm'
    twosample.pclt: no visible global function definition for 'pnorm'
    twosample.pclt: no visible global function definition for 'pchisq'
    Undefined global functions or variables:
     cor pchisq pnorm qbeta terms
    Consider adding
     importFrom("stats", "cor", "pchisq", "pnorm", "qbeta", "terms")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0-0.0
Check: Rd line widths
Result: NOTE
    Rd file 'perm-internal.Rd':
     \usage lines wider than 90 characters:
     ksample.exact.mc(scores, group, nmc = 10^4 - 1, seed = 1234321, digits = 12, p.conf.level = 0.99, setSEED = TRUE)
     trend.exact.mc(scores, group, alternative = "two.sided", nmc = 10^3 - 1, seed = 1234321, digits = 12, p.conf.level = 0.99, setSEED = TR ... [TRUNCATED]
     twosample.exact.mc(scores, group, alternative = "two.sided", nmc = 10^4 - 1, seed = 1234321, digits = 12, p.conf.level = 0.99, setSEED ... [TRUNCATED]
    
    Rd file 'perm.Rd':
     \usage lines wider than 90 characters:
     permKS(x, g, exact = NULL, method = NULL, methodRule = methodRuleKS1, control=permControl(), ...)
     permTREND(x, y, alternative = c("two.sided", "less", "greater"), exact = NULL, method = NULL, methodRule = methodRuleTREND1, control=pe ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package rateratio.test

Current CRAN status: NOTE: 12

Version: 1.0-2
Check: R code for possible problems
Result: NOTE
    rateratio.test: no visible global function definition for
     'complete.cases'
    rateratio.test: no visible global function definition for 'pbinom'
    rateratio.test : p.L: no visible global function definition for 'qbeta'
    rateratio.test : p.U: no visible global function definition for 'qbeta'
    Undefined global functions or variables:
     complete.cases pbinom qbeta
    Consider adding
     importFrom("stats", "complete.cases", "pbinom", "qbeta")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package saws

Current CRAN status: NOTE: 12

Version: 0.9-6.1
Check: R code for possible problems
Result: NOTE
    clogistCalc: no visible global function definition for 'model.matrix'
    clogistCalc: no visible global function definition for 'glm.fit'
    clogistCalc: no visible global function definition for 'binomial'
    clogistInfo : all.not.equal: no visible global function definition for
     'var'
    geeUOmega: no visible global function definition for 'model.extract'
    geeUOmega: no visible global function definition for 'model.matrix'
    geeUOmega: no visible binding for global variable 'contrasts'
    mgee: no visible binding for global variable 'gaussian'
    sawsCalc: no visible global function definition for 'pf'
    sawsCalc: no visible global function definition for 'qt'
    Undefined global functions or variables:
     binomial contrasts gaussian glm.fit model.extract model.matrix pf qt
     var
    Consider adding
     importFrom("stats", "binomial", "contrasts", "gaussian", "glm.fit",
     "model.extract", "model.matrix", "pf", "qt", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package ssanv

Current CRAN status: OK: 12