CRAN Package Check Results for Package largeVis

Last updated on 2017-12-12 10:52:38 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.1 193.85 51.29 245.14 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc 0.2.1 173.95 41.16 215.11 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang 0.2.1 477.26 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.1 434.79 NOTE
r-devel-windows-ix86+x86_64 0.2.1 557.00 206.00 763.00 NOTE
r-patched-linux-x86_64 0.2.1 199.88 56.64 256.52 OK --no-examples --no-tests --no-vignettes
r-patched-solaris-x86 0.2.1 389.20 ERROR
r-release-linux-x86_64 0.2.1 206.89 57.21 264.10 OK --no-examples --no-tests --no-vignettes
r-release-windows-ix86+x86_64 0.2.1 460.00 202.00 662.00 NOTE
r-release-osx-x86_64 0.2.1 NOTE
r-oldrel-windows-ix86+x86_64 0.2.1 543.00 187.00 730.00 NOTE
r-oldrel-osx-x86_64 0.2.1 NOTE

Check Details

Version: 0.2.1
Check: installed package size
Result: NOTE
     installed size is 18.5Mb
     sub-directories of 1Mb or more:
     libs 13.5Mb
     testdata 1.8Mb
     vignettedata 2.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.1
Check: examples
Result: ERROR
    Running examples in ‘largeVis-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: as.dendrogram.hdbscan
    > ### Title: as.dendrogram.hdbscan
    > ### Aliases: as.dendrogram.hdbscan
    >
    > ### ** Examples
    >
    > data(iris)
    > vis <- largeVis(t(iris[,1:4]), K = 20, sgd_batches = 1, threads = 1)
    Error: C stack usage 193490240 is too close to the limit
    
    error: Mat::col(): index out of bounds
    
    error: Mat::col(): index out of bounds
    terminate called after throwing an instance of 'std::logic_error'
     what(): Mat::col(): index out of bounds
Flavor: r-patched-solaris-x86

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [8s/24s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(largeVis)
     Loading required package: Matrix
     largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
     >
     > test_check("largeVis")
     Error: C stack usage 194997056 is too close to the limit
     Error: C stack usage 194997056 is too close to the limit
     Error: C stack usage 194997056 is too close to the limit
     Error: C stack usage 194997056 is too close to the limit
     Error: C stack usage 194997056 is too close to the limit
     Error: C stack usage 194997056 is too close to the limit
     1. Failure: max threshold is sufficient to find all neighbors (@test_b_neighbors.R#60)
     `score` is not more than M * ncol(dat) - 1. Difference: -699
    
    
     Error: C stack usage 194997056 is too close to the limit
     2. Failure: exploration is not negative (@test_b_neighbors.R#72) ---------------
     baseline is not more than (M * ncol(dat)) - 1. Difference: -699
    
    
     Error: C stack usage 194997056 is too close to the limit
     Warning: stack imbalance in '.Call', 126 then 130
     Warning: stack imbalance in '{', 122 then 126
     Error: C stack usage 194997056 is too close to the limit
     Error: C stack usage 194997056 is too close to the limit
     3. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_neighbors.R#107)
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 59 - 0 == 59
    
    
     4. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_neighbors.R#110)
     `score` is not more than M * ncol(dat) - 1. Difference: -739
    
    
     Error: C stack usage 194997056 is too close to the limit
     5. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_neighbors.R#126)
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 139 - 0 == 139
    
    
     6. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_neighbors.R#129)
     `score` is not more than M * ncol(dat) - 1. Difference: -732
    
    
     Error: C stack usage 194997056 is too close to the limit
     7. Failure: Can determine iris neighbors accurately, Euclidean (@test_b_neighbors.R#140)
     sum(neighbors != bests, na.rm = TRUE) is not less than 5. Difference: 731
    
    
     8. Failure: With a bigger dataset, performance is as expected (@test_b_neighbors.R#167)
     threshold = 160 is not less than `oldscore`. Difference: 3
    
    
     9. Failure: With a bigger dataset, performance is as expected (@test_b_neighbors.R#183)
     n_trees= 40 is not less than `oldscore`. Difference: 1
    
    
     Warning: stack imbalance in '.Call', 137 then 133
     Warning: stack imbalance in '{', 133 then 129
     10. Failure: With a bigger dataset, performance is as expected (@test_b_neighbors.R#199)
     iters= 20 is not less than `oldscore`. Difference: 7
    
    
    
     error:
     error: Mat::col(): index out of boundsMat::col(): index out of bounds
    
     terminate called after throwing an instance of 'std::logic_error'
     what(): Mat::col(): index out of bounds
Flavor: r-patched-solaris-x86

Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in unit(c(t, r, b, l), unit) : NAs introduced by coercion
    Error: C stack usage 309095744 is too close to the limit
    
    error: Mat::col(): index out of bounds
    
    error: Mat::col(): index out of bounds
    terminate called after throwing an instance of 'std::logic_error'
     what(): Mat::col(): index out of bounds
Flavor: r-patched-solaris-x86