CRAN Package Check Results for Package largeVis

Last updated on 2018-02-25 07:47:27 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.1.1 202.84 56.23 259.07 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc 0.2.1.1 174.55 44.45 219.00 OK --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang 0.2.1.1 466.87 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.1.1 435.48 NOTE
r-devel-windows-ix86+x86_64 0.2.1.1 543.00 241.00 784.00 NOTE
r-patched-linux-x86_64 0.2.1.1 211.72 59.14 270.86 OK --no-examples --no-tests --no-vignettes
r-patched-solaris-x86 0.2.1.1 341.90 ERROR
r-release-linux-x86_64 0.2.1.1 210.20 56.25 266.45 OK --no-examples --no-tests --no-vignettes
r-release-windows-ix86+x86_64 0.2.1.1 564.00 239.00 803.00 NOTE
r-release-osx-x86_64 0.2.1.1 NOTE
r-oldrel-windows-ix86+x86_64 0.2.1.1 438.00 185.00 623.00 NOTE
r-oldrel-osx-x86_64 0.2.1 NOTE

Additional issues

clang-ASAN

Check Details

Version: 0.2.1.1
Check: installed package size
Result: NOTE
     installed size is 19.1Mb
     sub-directories of 1Mb or more:
     libs 14.0Mb
     testdata 1.8Mb
     vignettedata 2.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.1.1
Check: examples
Result: ERROR
    Running examples in ‘largeVis-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: as.dendrogram.hdbscan
    > ### Title: as.dendrogram.hdbscan
    > ### Aliases: as.dendrogram.hdbscan
    >
    > ### ** Examples
    >
    > data(iris)
    > vis <- largeVis(t(iris[,1:4]), K = 20, sgd_batches = 1, threads = 1)
    Error: C stack usage 193490400 is too close to the limit
    
    error:
    error: Mat::col(): index out of bounds
    Mat::col(): index out of bounds
    terminate called recursively
    terminate called after throwing an instance of '
Flavor: r-patched-solaris-x86

Version: 0.2.1.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [8s/22s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(largeVis)
     Loading required package: Matrix
     largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
     >
     > test_check("largeVis")
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     ── 1. Failure: max threshold is sufficient to find all neighbors (@test_b_neighb
     `score` is not more than M * ncol(dat) - 1. Difference: -737
    
     Error: C stack usage 194800608 is too close to the limit
     ── 2. Failure: exploration is not negative (@test_b_neighbors.R#72) ───────────
     baseline is not more than (M * ncol(dat)) - 1. Difference: -699
    
     Error: C stack usage 194800608 is too close to the limit
     ── 3. Failure: exploration is not negative (@test_b_neighbors.R#82) ───────────
     1 iteration is not more than `oldscore`. Difference: -45
    
     Error: C stack usage 194800608 is too close to the limit
     Warning: stack imbalance in '.Call', 109 then 105
     Warning: stack imbalance in '{', 105 then 101
     Error: C stack usage 194800608 is too close to the limit
     ── 4. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_ne
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 127 - 0 == 127
    
     ── 5. Failure: Can determine iris neighbors with iterations 1 thread (@test_b_ne
     `score` is not more than M * ncol(dat) - 1. Difference: -729
    
     Error: C stack usage 194800608 is too close to the limit
     ── 6. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_n
     sum(neighbors[, 1:40] > 50) not equal to 0.
     1/1 mismatches
     [1] 161 - 0 == 161
    
     ── 7. Failure: Can determine iris neighbors with iterations 2 threads (@test_b_n
     `score` is not more than M * ncol(dat) - 1. Difference: -738
    
     Error: C stack usage 194800608 is too close to the limit
     ── 8. Failure: Can determine iris neighbors accurately, Euclidean (@test_b_neigh
     sum(neighbors != bests, na.rm = TRUE) is not less than 5. Difference: 740
    
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     Error: C stack usage 194800608 is too close to the limit
     ── 9. Failure: With a bigger dataset, performance is as expected (@test_b_neighb
     iters= 20 is not less than `oldscore`. Difference: 2
    
    
     error:
     error: Mat::col(): index out of bounds
     Mat::col(): index out of bounds
     terminate called recursively
     terminate called after throwing an instance of 'std::logic_error
Flavor: r-patched-solaris-x86

Version: 0.2.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    largeVis was compiled with 32-bit types. This will limit the size of the datasets it can process. Consider recompiling with -DARMA_64BIT_WORD
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in unit(c(t, r, b, l), unit) : NAs introduced by coercion
    Error: C stack usage 309095904 is too close to the limit
    
    error: Mat::col(): index out of bounds
    
    error: Mat::col(): index out of bounds
    terminate called recursively
    terminate called after throwing an instance of '
Flavor: r-patched-solaris-x86

Version: 0.2.1
Check: installed package size
Result: NOTE
     installed size is 16.0Mb
     sub-directories of 1Mb or more:
     libs 11.1Mb
     testdata 1.8Mb
     vignettedata 2.0Mb
Flavor: r-oldrel-osx-x86_64