CRAN Package Check Results for Package geomorph

Last updated on 2019-12-16 04:48:07 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1.3 18.25 213.33 231.58 ERROR
r-devel-linux-x86_64-debian-gcc 3.1.3 15.55 166.91 182.46 ERROR
r-devel-linux-x86_64-fedora-clang 3.1.3 326.60 OK
r-devel-linux-x86_64-fedora-gcc 3.1.3 338.88 OK
r-devel-windows-ix86+x86_64 3.1.3 28.00 297.00 325.00 OK
r-devel-windows-ix86+x86_64-gcc8 3.1.3 26.00 344.00 370.00 OK
r-patched-linux-x86_64 3.1.3 14.19 240.58 254.77 OK
r-patched-solaris-x86 3.1.3 477.00 OK
r-release-linux-x86_64 3.1.3 15.10 240.17 255.27 OK
r-release-windows-ix86+x86_64 3.1.3 26.00 231.00 257.00 OK
r-release-osx-x86_64 3.1.3 WARN
r-oldrel-windows-ix86+x86_64 3.1.3 19.00 231.00 250.00 OK
r-oldrel-osx-x86_64 3.1.3 WARN

Check Details

Version: 3.1.3
Check: examples
Result: ERROR
    Running examples in 'geomorph-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: bilat.symmetry
    > ### Title: Analysis of bilateral symmetry
    > ### Aliases: bilat.symmetry
    > ### Keywords: analysis
    >
    > ### ** Examples
    >
    > #Example of matching symmetry
    >
    > data(mosquito)
    > gdf <- geomorph.data.frame(wingshape = mosquito$wingshape, ind=mosquito$ind, side=mosquito$side,
    + replicate=mosquito$replicate)
    > mosquito.sym <- bilat.symmetry(A = wingshape, ind = ind, side = side,
    + replicate = replicate, object.sym = FALSE, RRPP = TRUE, iter = 499, data = gdf)
    
    Initial GPA
    
     |
     | | 0%
     |
     |============== | 20%
     |
     |============================ | 40%
     |
     |======================================================================| 100%
    Error in dots.updated[list.check1] : invalid subscript type 'list'
    Calls: bilat.symmetry -> geomorph.data.frame
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 3.1.3
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: dependencies in R code
Result: NOTE
    No protocol specified
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: S3 generic/method consistency
Result: WARN
    No protocol specified
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: replacement functions
Result: WARN
    No protocol specified
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: foreign function calls
Result: NOTE
    No protocol specified
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: R code for possible problems
Result: NOTE
    No protocol specified
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: for missing documentation entries
Result: WARN
    No protocol specified
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: for code/documentation mismatches
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.1.3
Check: Rd \usage sections
Result: NOTE
    No protocol specified
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64