CRAN Package Check Results for Package VBLPCM

Last updated on 2018-12-10 01:51:20 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4.5 11.35 82.43 93.78 OK
r-devel-linux-x86_64-debian-gcc 2.4.5 8.74 62.80 71.54 OK
r-devel-linux-x86_64-fedora-clang 2.4.5 107.78 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4.5 110.00 NOTE
r-devel-windows-ix86+x86_64 2.4.5 33.00 136.00 169.00 OK
r-patched-linux-x86_64 2.4.5 8.31 77.23 85.54 OK
r-patched-solaris-x86 2.4.5 157.80 OK
r-release-linux-x86_64 2.4.5 9.49 76.53 86.02 OK
r-release-windows-ix86+x86_64 2.4.5 21.00 129.00 150.00 OK
r-release-osx-x86_64 2.4.5 OK
r-oldrel-windows-ix86+x86_64 2.4.5 23.00 187.00 210.00 OK
r-oldrel-osx-x86_64 2.4.5 ERROR

Check Details

Version: 2.4.5
Check: compiled code
Result: NOTE
    File ‘VBLPCM/libs/VBLPCM.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.4.5
Check: examples
Result: ERROR
    Running examples in ‘VBLPCM-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: VBLPCM-package
    > ### Title: VBLPCM: Variational Bayes for the Latent Position Cluster Model
    > ### for networks
    > ### Aliases: VBLPCM-package VBLPCM
    > ### Keywords: graphs networks variational package models latentnet
    >
    > ### ** Examples
    >
    > ### Sampson's monks with sender random effects ###
    > data(sampson,package="VBLPCM")
    > v.start<-vblpcmstart(samplike,G=3,model="rreceiver",LSTEPS=1e3)
    Node 1, Reach 18, Total 18
    Node 2, Reach 18, Total 36
    Node 3, Reach 18, Total 54
    Node 4, Reach 18, Total 72
    Node 5, Reach 18, Total 90
    Node 6, Reach 18, Total 108
    Node 7, Reach 18, Total 126
    Node 8, Reach 18, Total 144
    Node 9, Reach 18, Total 162
    Node 10, Reach 18, Total 180
    Node 11, Reach 18, Total 198
    Node 12, Reach 18, Total 216
    Node 13, Reach 18, Total 234
    Node 14, Reach 18, Total 252
    Node 15, Reach 18, Total 270
    Node 16, Reach 18, Total 288
    Node 17, Reach 18, Total 306
    Node 18, Reach 18, Total 324
    > v.fit<-vblpcmfit(v.start,STEPS=20)
    1 / 20 iterations
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    19 / 20 iterations
    20 / 20 iterations
    KL distance to true posterior is -453.9989 + constant
    > ### plot the mean posterior positions ###
    > plot(v.fit, R2=0.05,main="Sampson's Monks: VB with Receiver Random Effects")
    > ### Who's in each group? ###
    > vblpcmgroups(v.fit)
    The 3 Groups are:
    
    ***************** black **********************
    Romul_10
    Bonaven_5
    Ambrose_9
    Berth_6
    Peter_4
    Louis_11
    Victor_8
    
    ***************** red **********************
    Winf_12
    John_1
    Greg_2
    Hugh_14
    Boni_15
    Mark_7
    Albert_16
    
    ***************** green3 **********************
    Amand_13
    Basil_3
    Elias_17
    Simp_18
    >
    > ### Look at a goodness-of-fit plot ###
    > plot(gof(v.fit,GOF=~distance))
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' is a list, but does not have components 'x' and 'y'
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavor: r-oldrel-osx-x86_64