CRAN Package Check Results for Package PANDA

Last updated on 2018-05-21 00:50:12 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.9 9.10 175.96 185.06 NOTE
r-devel-linux-x86_64-debian-gcc 0.9.9 8.14 148.92 157.06 NOTE
r-devel-linux-x86_64-fedora-clang 0.9.9 247.65 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.9 245.16 NOTE
r-devel-windows-ix86+x86_64 0.9.9 21.00 190.00 211.00 WARN
r-patched-linux-x86_64 0.9.9 7.99 184.33 192.32 NOTE
r-patched-solaris-x86 0.9.9 290.80 NOTE
r-release-linux-x86_64 0.9.9 7.13 178.35 185.48 NOTE
r-release-windows-ix86+x86_64 0.9.9 15.00 184.00 199.00 WARN
r-release-osx-x86_64 0.9.9 NOTE
r-oldrel-windows-ix86+x86_64 0.9.9 14.00 281.00 295.00 WARN
r-oldrel-osx-x86_64 0.9.9 ERROR

Check Details

Version: 0.9.9
Check: R code for possible problems
Result: NOTE
    GOpredict: no visible global function definition for ‘fisher.test’
    KEGGpredict: no visible global function definition for ‘fisher.test’
    ProteinCluster: no visible global function definition for ‘ecdf’
    ProteinCluster: no visible global function definition for ‘as.hclust’
    ProteinCluster: no visible global function definition for
     ‘as.dendrogram’
    ProteinCluster : addE: no visible global function definition for
     ‘is.leaf’
    ProteinCluster: no visible global function definition for ‘plot’
    SignificantSubcluster: no visible global function definition for
     ‘order.dendrogram’
    SignificantSubcluster: no visible global function definition for
     ‘fisher.test’
    SignificantSubcluster: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     as.dendrogram as.hclust ecdf fisher.test is.leaf order.dendrogram
     plot
    Consider adding
     importFrom("graphics", "plot")
     importFrom("stats", "as.dendrogram", "as.hclust", "ecdf",
     "fisher.test", "is.leaf", "order.dendrogram")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.9
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    
    Error: processing vignette 'PANDA.Rnw' failed with diagnostics:
     chunk 6
    Error in initialize(value, ...) :
     argument "go_id" is missing, with no default
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.9
Check: package dependencies
Result: ERROR
    Package required but not available: ‘GO.db’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64