CRAN Package Check Results for Package PANDA

Last updated on 2018-11-18 10:50:08 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.9 8.29 186.48 194.77 NOTE
r-devel-linux-x86_64-debian-gcc 0.9.9 6.18 137.15 143.33 NOTE
r-devel-linux-x86_64-fedora-clang 0.9.9 222.09 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.9 218.39 NOTE
r-devel-windows-ix86+x86_64 0.9.9 17.00 248.00 265.00 NOTE
r-patched-linux-x86_64 0.9.9 9.15 184.57 193.72 NOTE
r-patched-solaris-x86 0.9.9 293.10 NOTE
r-release-linux-x86_64 0.9.9 8.73 184.01 192.74 NOTE
r-release-windows-ix86+x86_64 0.9.9 20.00 245.00 265.00 NOTE
r-release-osx-x86_64 0.9.9 NOTE
r-oldrel-windows-ix86+x86_64 0.9.9 20.00 285.00 305.00 WARN
r-oldrel-osx-x86_64 0.9.9 ERROR

Check Details

Version: 0.9.9
Check: R code for possible problems
Result: NOTE
    GOpredict: no visible global function definition for ‘fisher.test’
    KEGGpredict: no visible global function definition for ‘fisher.test’
    ProteinCluster: no visible global function definition for ‘ecdf’
    ProteinCluster: no visible global function definition for ‘as.hclust’
    ProteinCluster: no visible global function definition for
     ‘as.dendrogram’
    ProteinCluster : addE: no visible global function definition for
     ‘is.leaf’
    ProteinCluster: no visible global function definition for ‘plot’
    SignificantSubcluster: no visible global function definition for
     ‘order.dendrogram’
    SignificantSubcluster: no visible global function definition for
     ‘fisher.test’
    SignificantSubcluster: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     as.dendrogram as.hclust ecdf fisher.test is.leaf order.dendrogram
     plot
    Consider adding
     importFrom("graphics", "plot")
     importFrom("stats", "as.dendrogram", "as.hclust", "ecdf",
     "fisher.test", "is.leaf", "order.dendrogram")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.9
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    
    Error: processing vignette 'PANDA.Rnw' failed with diagnostics:
     chunk 6
    Error in initialize(value, ...) :
     argument "go_id" is missing, with no default
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.9.9
Check: package dependencies
Result: ERROR
    Package required but not available: ‘GO.db’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64