* using log directory 'd:/Rcompile/CRANpkg/local/2.9/MBESS.Rcheck' * using R version 2.9.2 Patched (2009-09-02 r49531) * using session charset: ISO8859-1 * checking for file 'MBESS/DESCRIPTION' ... OK * this is package 'MBESS' version '2.0.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'MBESS' can be installed ... WARNING Found the following significant warnings: Warning: unmatched right brace in file 'HS.data.Rd' on line 87 Warning: unmatched right brace in file 'HS.data.Rd' on line 87 Warning: unmatched right brace in file 'ci.rc.Rd' on line 77 Warning: unmatched right brace in file 'ci.rc.Rd' on line 77 Warning: unmatched right brace in file 'ci.sc.Rd' on line 37 Warning: unmatched right brace in file 'ci.sc.Rd' on line 37 Warning: unmatched right brace in file 'ci.smd.c.Rd' on line 8 Warning: unmatched right brace in file 'ci.smd.c.Rd' on line 8 Warning: unmatched right brace in file 'ci.src.Rd' on line 79 Warning: unmatched right brace in file 'ci.src.Rd' on line 79 Warning: unmatched right brace in file 'ci.srsnr.Rd' on line 55 Warning: unmatched right brace in file 'ci.srsnr.Rd' on line 55 Warning: unmatched right brace in file 'intr.plot.2d.Rd' on line 49 Warning: unmatched right brace in file 'intr.plot.2d.Rd' on line 49 Warning: unmatched right brace in file 'intr.plot.Rd' on line 48 Warning: unmatched right brace in file 'intr.plot.Rd' on line 48 Warning: invalid whitespace before brace in file 'power.density.equivalence.md.Rd' at '\item{power_density} {density at diff for power of TOST (probability that (1-2*this-is-escaped-code{) confidence interval will lie within (this-is-escaped-codenormal-bracket30bracket-normal,this-is-escaped-codenormal-bracket31bracket-normal), given this-is-escaped-codenormal-bracket32bracket-normal, this-is-escaped-codenormal-bracket33bracket-normal, and this-is-escaped-codenormal-bracket34bracket-normal)}' Warning: invalid whitespace before brace in file 'power.density.equivalence.md.Rd' at '\item{power_density} {density at diff for power of TOST (probability that (1-2*this-is-escaped-code{) confidence interval will lie within (this-is-escaped-codenormal-bracket30bracket-normal,this-is-escaped-codenormal-bracket31bracket-normal), given this-is-escaped-codenormal-bracket32bracket-normal, this-is-escaped-codenormal-bracket33bracket-normal, and this-is-escaped-codenormal-bracket34bracket-normal)}' Warning: unmatched right brace in file 'ss.aipe.cv.Rd' on line 3 Warning: unmatched right brace in file 'ss.aipe.cv.Rd' on line 33 Warning: unmatched right brace in file 'ss.aipe.cv.Rd' on line 3 Warning: unmatched right brace in file 'ss.aipe.cv.Rd' on line 33 Warning: unmatched right brace in file 'ss.aipe.rc.sensitivity.Rd' on line 77 Warning: unmatched right brace in file 'ss.aipe.rc.sensitivity.Rd' on line 77 Warning: unmatched right brace in file 'ss.aipe.sc.Rd' on line 47 Warning: unmatched right brace in file 'ss.aipe.sc.Rd' on line 47 Warning: unmatched right brace in file 'ss.aipe.sc.ancova.Rd' on line 58 Warning: unmatched right brace in file 'ss.aipe.sc.ancova.Rd' on line 58 Warning: unmatched right brace in file 'ss.aipe.sc.ancova.sensitivity.Rd' on line 85 Warning: unmatched right brace in file 'ss.aipe.sc.ancova.sensitivity.Rd' on line 85 Warning: unmatched right brace in file 'ss.aipe.sc.sensitivity.Rd' on line 77 Warning: unmatched right brace in file 'ss.aipe.sc.sensitivity.Rd' on line 77 Warning: unmatched right brace in file 'ss.aipe.sm.Rd' on line 44 Warning: unmatched right brace in file 'ss.aipe.sm.Rd' on line 44 Warning: unmatched right brace in file 'ss.aipe.src.sensitivity.Rd' on line 81 Warning: unmatched right brace in file 'ss.aipe.src.sensitivity.Rd' on line 81 Warning: unmatched right brace in file 'ss.power.rc.Rd' on line 7 Warning: unmatched right brace in file 'ss.power.rc.Rd' on line 7 Warning: unmatched right brace in file 'ss.power.reg.coef.Rd' on line 36 Warning: unmatched right brace in file 'ss.power.reg.coef.Rd' on line 36 See 'd:/Rcompile/CRANpkg/local/2.9/MBESS.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd files against version 2 parser ... WARNING *** error on file ./man/HS.data.Rd Error in parse_Rd("./man/HS.data.Rd", encoding = "unknown") : ./man/HS.data.Rd:87:1: unexpected '}' 86: 87: } ^ Warning: ./man/ci.R2.Rd:56: Unnecessary braces at '{A}' *** error on file ./man/ci.rc.Rd Error in parse_Rd("./man/ci.rc.Rd", encoding = "unknown") : ./man/ci.rc.Rd:77:1: unexpected '}' 76: %\examples{ 77: } ^ Warning: ./man/ci.reg.coef.Rd:38: Unnecessary braces at '{O}' *** error on file ./man/ci.sc.Rd Error in parse_Rd("./man/ci.sc.Rd", encoding = "unknown") : ./man/ci.sc.Rd:37:1: unexpected '}' 36: %\details{ 37: } ^ *** error on file ./man/ci.smd.c.Rd Error in parse_Rd("./man/ci.smd.c.Rd", encoding = "unknown") : ./man/ci.smd.c.Rd:8:1: unexpected '}' 7: Function to calculate the confidence limits for the standardized mean difference using the control group standard deviation as the divisor (Glass's g).} 8: } ^ *** error on file ./man/ci.src.Rd Error in parse_Rd("./man/ci.src.Rd", encoding = "unknown") : ./man/ci.src.Rd:79:1: unexpected '}' 78: %\examples{ 79: } ^ *** error on file ./man/ci.srsnr.Rd Error in parse_Rd("./man/ci.srsnr.Rd", encoding = "unknown") : ./man/ci.srsnr.Rd:55:1: unexpected '}' 54: % \note{ 55: } ^ *** error on file ./man/intr.plot.2d.Rd Error in parse_Rd("./man/intr.plot.2d.Rd", encoding = "unknown") : ./man/intr.plot.2d.Rd:49:1: unexpected '}' 48: 49: } ^ *** error on file ./man/intr.plot.Rd Error in parse_Rd("./man/intr.plot.Rd", encoding = "unknown") : ./man/intr.plot.Rd:48:1: unexpected '}' 47: %\value{ 48: } ^ Warning in parse_Rd("./man/power.density.equivalence.md.Rd", encoding = "unknown") : bad markup (extra space?) at power.density.equivalence.md.Rd:27:23 Warning: ./man/power.density.equivalence.md.Rd:27: Unnecessary braces at '{density at diff for power of TOST (probability that (1-2*\code{alpha}) confidence interval will lie within (\code{theta1},\code{theta2}), given \code{sigma}, \code{n}, and \code{nu})}' Warning: ./man/ss.aipe.R2.Rd:71: Unnecessary braces at '{A}' *** error on file ./man/ss.aipe.R2.Rd Error : ./man/ss.aipe.R2.Rd:80: Unrecognized macro \textit Warning: ./man/ss.aipe.R2.sensitivity.Rd:64: Unnecessary braces at '{A}' *** error on file ./man/ss.aipe.c.Rd Error : ./man/ss.aipe.c.Rd:28: Unrecognized macro \bf *** error on file ./man/ss.aipe.c.ancova.Rd Error : ./man/ss.aipe.c.ancova.Rd:30: Unrecognized macro \bf *** error on file ./man/ss.aipe.cv.Rd Error in parse_Rd("./man/ss.aipe.cv.Rd", encoding = "unknown") : ./man/ss.aipe.cv.Rd:3:147: unexpected '}' 2: \alias{ss.aipe.cv} 3: \title{Sample size planning for the coefficient of variation given the goal of Accuracy in Parameter Estimation approach to sample size planning.}} ^ *** error on file ./man/ss.aipe.rc.sensitivity.Rd Error in parse_Rd("./man/ss.aipe.rc.sensitivity.Rd", encoding = "unknown") : ./man/ss.aipe.rc.sensitivity.Rd:77:1: unexpected '}' 76: %\examples{ 77: } ^ Warning: ./man/ss.aipe.reg.coef.Rd:37: Unnecessary braces at '{O}' Warning: ./man/ss.aipe.reg.coef.sensitivity.Rd:42: Unnecessary braces at '{O}' *** error on file ./man/ss.aipe.sc.Rd Error in parse_Rd("./man/ss.aipe.sc.Rd", encoding = "unknown") : ./man/ss.aipe.sc.Rd:47:1: unexpected '}' 46: no significance tests?} (pp. 221-257). Mahwah, NJ: Lawrence Erlbaum. } 47: } ^ *** error on file ./man/ss.aipe.sc.ancova.Rd Error in parse_Rd("./man/ss.aipe.sc.ancova.Rd", encoding = "unknown") : ./man/ss.aipe.sc.ancova.Rd:58:71: unexpected '}' 57: statistical methods. In L. L. Harlow, S. A. Mulaik, & J.H. Steiger (Eds.), \emph{What if there where 58: no significance tests?} (pp. 221-257). Mahwah, NJ: Lawrence Erlbaum. }} ^ *** error on file ./man/ss.aipe.sc.ancova.sensitivity.Rd Error in parse_Rd("./man/ss.aipe.sc.ancova.sensitivity.Rd", encoding = "unknown") : ./man/ss.aipe.sc.ancova.sensitivity.Rd:85:1: unexpected '}' 84: no significance tests?} (pp. 221-257). Mahwah, NJ: Lawrence Erlbaum. } 85: } ^ *** error on file ./man/ss.aipe.sc.sensitivity.Rd Error in parse_Rd("./man/ss.aipe.sc.sensitivity.Rd", encoding = "unknown") : ./man/ss.aipe.sc.sensitivity.Rd:77:1: unexpected '}' 76: no significance tests?} (pp. 221-257). Mahwah, NJ: Lawrence Erlbaum. } 77: } ^ *** error on file ./man/ss.aipe.sm.Rd Error in parse_Rd("./man/ss.aipe.sm.Rd", encoding = "unknown") : ./man/ss.aipe.sm.Rd:44:1: unexpected '}' 43: no significance tests?} (pp. 221-257). Mahwah, NJ: Lawrence Erlbaum. } 44: } ^ *** error on file ./man/ss.aipe.src.Rd Error in parse_Rd("./man/ss.aipe.src.Rd", encoding = "unknown") : ./man/ss.aipe.src.Rd:67:1: unexpected section header 66: 67: \section ^ *** error on file ./man/ss.aipe.src.sensitivity.Rd Error in parse_Rd("./man/ss.aipe.src.sensitivity.Rd", encoding = "unknown") : ./man/ss.aipe.src.sensitivity.Rd:81:1: unexpected '}' 80: %\examples{ 81: } ^ *** error on file ./man/ss.power.rc.Rd Error in parse_Rd("./man/ss.power.rc.Rd", encoding = "unknown") : ./man/ss.power.rc.Rd:7:1: unexpected '}' 6: Determine the necessary sample size for a targeted regression coefficient or determine the degree of power given a specified sample size} 7: } ^ *** error on file ./man/ss.power.reg.coef.Rd Error in parse_Rd("./man/ss.power.reg.coef.Rd", encoding = "unknown") : ./man/ss.power.reg.coef.Rd:36:1: unexpected '}' 35: for several options.} 36: } ^ problems found in 'HS.data.Rd', 'ci.rc.Rd', 'ci.sc.Rd', 'ci.smd.c.Rd', 'ci.src.Rd', 'ci.srsnr.Rd', 'intr.plot.2d.Rd', 'intr.plot.Rd', 'ss.aipe.R2.Rd', 'ss.aipe.c.Rd', 'ss.aipe.c.ancova.Rd', 'ss.aipe.cv.Rd', 'ss.aipe.rc.sensitivity.Rd', 'ss.aipe.sc.Rd', 'ss.aipe.sc.ancova.Rd', 'ss.aipe.sc.ancova.sensitivity.Rd', 'ss.aipe.sc.sensitivity.Rd', 'ss.aipe.sm.Rd', 'ss.aipe.src.Rd', 'ss.aipe.src.sensitivity.Rd', 'ss.power.rc.Rd', 'ss.power.reg.coef.Rd' * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK