* using log directory 'd:/Rcompile/CRANpkg/local/2.10/GSA.Rcheck' * using R version 2.10.0 (2009-10-26) * using session charset: ISO8859-1 * checking for file 'GSA/DESCRIPTION' ... OK * this is package 'GSA' version '1.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'GSA' can be installed ... WARNING Found the following significant warnings: Warning: bad markup (extra space?) at GSA.Rd:22:9 Warning: ./man/GSA.correlate.Rd:7: unexpected '}' Warning: bad markup (extra space?) at GSA.func.Rd:24:9 Warning: bad markup (extra space?) at GSA.genescores.Rd:12:16 Warning: ./man/GSA.listsets.Rd:6: unexpected '}' Warning: ./man/GSA.plot.Rd:6: unexpected '}' See 'd:/Rcompile/CRANpkg/local/2.10/GSA.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING prepare_Rd: bad markup (extra space?) at GSA.Rd:22:9 prepare_Rd: GSA.correlate.Rd:7: unexpected '}' prepare_Rd: GSA.correlate.Rd:22-23: Dropping empty section \value prepare_Rd: bad markup (extra space?) at GSA.func.Rd:24:9 prepare_Rd: bad markup (extra space?) at GSA.genescores.Rd:12:16 prepare_Rd: GSA.listsets.Rd:6: unexpected '}' prepare_Rd: GSA.make.features.Rd:29-30: Dropping empty section \value prepare_Rd: GSA.plot.Rd:6: unexpected '}' * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking examples ... OK * checking PDF version of manual ... OK